Health / Pharmaceuticals
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45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Protein–protein docking is the computational prediction of protein complex structure as it would occur in a living organism given the individually solved component protein structures. Profacgen makes use of state-of-the-art docking software tools to find the relative transformation and conformation of two proteins that result in a stable (energetically favorable) complex. The docking process is composed of two main steps: 1) Generating a set of configurations which reliably includes at least one nearly correct one and 2) reliably distinguishing nearly correct configurations from the others with a scoring function. Our procedure starts with rigid body global search based on the... read more
Protein–protein docking is the computational prediction of protein complex structure as it would occur in a living organism given the individually solved component protein structures. Profacgen makes use of state-of-the-art docking software tools to find the relative transformation and conformation of two proteins that result in a stable (energetically favorable) complex. The docking process is composed of two main steps: 1) Generating a set of configurations which reliably includes at least one nearly correct one and 2) reliably distinguishing nearly correct configurations from the others with a scoring function. Our procedure starts with rigid body global search based on the... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Profacgen makes use of the most state-of-the-art protein–ligand docking software tools to predict the position and orientation of a ligand when it is bound to a protein receptor by calculating the site geometry and energy. The process of docking a ligand to a binding site mimics the natural course of interaction of the ligand and its receptor via the lowest energy pathway. Typically our modeling procedures starts with a target of known structure such as a crystallographic structure of a protein of interest. Docking is then used to predict the bound conformation and binding free energy of small molecules to... read more
Profacgen makes use of the most state-of-the-art protein–ligand docking software tools to predict the position and orientation of a ligand when it is bound to a protein receptor by calculating the site geometry and energy. The process of docking a ligand to a binding site mimics the natural course of interaction of the ligand and its receptor via the lowest energy pathway. Typically our modeling procedures starts with a target of known structure such as a crystallographic structure of a protein of interest. Docking is then used to predict the bound conformation and binding free energy of small molecules to... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Profacgen employs computational docking techniques for a variety of purposes. Single docking experiments are useful for exploring protein functions studying enzyme inhibitors and substrates and elucidating biochemical pathways. Virtual screening of large databases of available chemicals can be applied for lead detection and optimization. The docking procedure also works seamlessly with upstream and downstream computational modeling protocols which offers unparalleled opportunities for structure-based drug discovery.... read more
Profacgen employs computational docking techniques for a variety of purposes. Single docking experiments are useful for exploring protein functions studying enzyme inhibitors and substrates and elucidating biochemical pathways. Virtual screening of large databases of available chemicals can be applied for lead detection and optimization. The docking procedure also works seamlessly with upstream and downstream computational modeling protocols which offers unparalleled opportunities for structure-based drug discovery.... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Profacgen provides our expertise in helping recognize the correct structural fold among known template protein structures for a target protein by combining sequence profile-profile alignment with multiple structural information. Our approach starts with the construction of a structure template database/library and then incrementally replacing the sequence of a known protein structure in a library with a query sequence of unknown structure. Alignment of the target sequence with each of the structure templates is achieved by optimizing the designed scoring function. The process is repeated against all known 3D structures in the template database until an optimal fit is found. The... read more
Profacgen provides our expertise in helping recognize the correct structural fold among known template protein structures for a target protein by combining sequence profile-profile alignment with multiple structural information. Our approach starts with the construction of a structure template database/library and then incrementally replacing the sequence of a known protein structure in a library with a query sequence of unknown structure. Alignment of the target sequence with each of the structure templates is achieved by optimizing the designed scoring function. The process is repeated against all known 3D structures in the template database until an optimal fit is found. The... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Chemokine (C-C motif); ligand 25 (CCL25); is a small cytokine belonging to the CC chemokine family that is also known as TECK (Thymus-Expressed ChemoKine);. CCL25 is believed to play a role in the development of T-cells.1 It is chemotactic for thymocytes ... read more
Chemokine (C-C motif); ligand 25 (CCL25); is a small cytokine belonging to the CC chemokine family that is also known as TECK (Thymus-Expressed ChemoKine);. CCL25 is believed to play a role in the development of T-cells.1 It is chemotactic for thymocytes ... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
The bone morphogenetic proteins (BMPs) are a family of secreted signaling molecules that can induce ectopic bone growth. Many BMPs are part of the transforming growth factor-beta (TGFB) superfamily. BMPs were originally identified by an ability of demineralized bone extract to induce endochondral osteogenesis in vivo in an extraskeletal site. Based on its expression early in embryogenesis the BMP encoded by this gene has a proposed role in early development. In addition the fact that this BMP is closely related to BMP5 and BMP7 has led to speculation of possible bone inductive activity.... read more
The bone morphogenetic proteins (BMPs) are a family of secreted signaling molecules that can induce ectopic bone growth. Many BMPs are part of the transforming growth factor-beta (TGFB) superfamily. BMPs were originally identified by an ability of demineralized bone extract to induce endochondral osteogenesis in vivo in an extraskeletal site. Based on its expression early in embryogenesis the BMP encoded by this gene has a proposed role in early development. In addition the fact that this BMP is closely related to BMP5 and BMP7 has led to speculation of possible bone inductive activity.... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
BMP-7 also known as osteogenic protein 1 is a 431 amino acid secreted protein that belongs to the TGF-beta family. It is expressed in the kidney and bladder as well as in the brain at lower levels. During embryogenesis BMP-7 is detected in the developing eye brain and ear. BMP-7 is consisted of a disulfide-linked homodimer and it interacts with SOSTDC1 and TWSG1. Several N-termini starting at positions 293 300 315 and 316 have been identified by direct sequencing resulting in secretion of different mature forms. BMP-7 is determined to induce cartilage and bone formation. It may be the osteoinductive... read more
BMP-7 also known as osteogenic protein 1 is a 431 amino acid secreted protein that belongs to the TGF-beta family. It is expressed in the kidney and bladder as well as in the brain at lower levels. During embryogenesis BMP-7 is detected in the developing eye brain and ear. BMP-7 is consisted of a disulfide-linked homodimer and it interacts with SOSTDC1 and TWSG1. Several N-termini starting at positions 293 300 315 and 316 have been identified by direct sequencing resulting in secretion of different mature forms. BMP-7 is determined to induce cartilage and bone formation. It may be the osteoinductive... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
The bone morphogenetic proteins (BMPs) are a family of secreted signaling molecules that can induce ectopic bone growth. Many BMPs are part of the transforming growth factor-beta (TGFB) superfamily. BMPs were originally identified by an ability of demineralized bone extract to induce endochondral osteogenesis in vivo in an extraskeletal site. Based on its expression early in embryogenesis the BMP encoded by this gene has a proposed role in early development. In addition the fact that this BMP is closely related to BMP5 and BMP7 has lead to speculation of possible bone inductive activity.... read more
The bone morphogenetic proteins (BMPs) are a family of secreted signaling molecules that can induce ectopic bone growth. Many BMPs are part of the transforming growth factor-beta (TGFB) superfamily. BMPs were originally identified by an ability of demineralized bone extract to induce endochondral osteogenesis in vivo in an extraskeletal site. Based on its expression early in embryogenesis the BMP encoded by this gene has a proposed role in early development. In addition the fact that this BMP is closely related to BMP5 and BMP7 has lead to speculation of possible bone inductive activity.... read more
45-1 Ramsey Road, Shirley, New York 11967, USA, Shirley
Bone morphogenetic protein 4 is a protein that in humans is encoded by BMP4 gene. BMP4 is a member of the bone morphogenetic protein family which is part of the transforming growth factor-beta superfamily. The superfamily includes large families of growth and differentiation factors. https://www.creativebiomart.net/symbolsearch_BMP4.htm... read more
Bone morphogenetic protein 4 is a protein that in humans is encoded by BMP4 gene. BMP4 is a member of the bone morphogenetic protein family which is part of the transforming growth factor-beta superfamily. The superfamily includes large families of growth and differentiation factors. https://www.creativebiomart.net/symbolsearch_BMP4.htm... read more
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